SEC16A

Gene symbol: SEC16A
Gene: 9919
Uniprot Function: Acts as a molecular scaffold that plays a key role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining an ERES. Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus (PubMed:17192411, PubMed:17005010, PubMed:17428803, PubMed:21768384, PubMed:22355596). Mediates the recruitment of MIA3/TANGO to ERES (PubMed:28442536). Regulates both conventional (ER/Golgi-dependent) and GORASP2-mediated unconventional (ER/Golgi-independent) trafficking of CFTR to cell membrane (PubMed:28067262). Positively regulates the protein stability of E3 ubiquitin-protein ligases RNF152 and RNF183 and the ER localization of RNF183 (PubMed:29300766). Acts as a RAB10 effector in the regulation of insulin-induced SLC2A4/GLUT4 glucose transporter-enriched vesicles delivery to the cell membrane in adipocytes (By similarity).
Mitotic Index 0.0234
Interphase Cluster: #104 (23 genes)
Mitotic Cluster: #145 (19 genes)
sgRNA 1: AGAGACACGCTAGAGGACTG (interphase cells: 2603, mitotic cells: 65)
sgRNA 2: CCTGAAGGACCTGTTCCCAG (interphase cells: 2104, mitotic cells: 51)
sgRNA 3: TCCAGCCAGTACGATTATGG (interphase cells: 2259, mitotic cells: 44)
sgRNA 4: TGAGGCAGATCGCGCCAACG (interphase cells: 1133, mitotic cells: 34)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated 0.040 1321 of 5322 0.551
Nucleus DNA Mean -3.840e-03 2104 of 5322 0.979
Nucleus gH2AX Mean 0.038 3860 of 5322 0.296
Nucleus DNA - gH2AX Correlation 0.050 347 of 5322 0.115
Nucleus Shape Area -2.706e-04 3299 of 5322 0.914
Nucleus Shape Eccentricity -1.135e-01 5148 of 5322 4.529e-04
Nucleus Shape Form Factor -3.385e-02 1905 of 5322 0.378
Nucleus Shape Solidity -4.429e-02 2449 of 5322 0.168
Cell DNA Mass Displacement -6.789e-03 4674 of 5322 0.877
Cell Tubulin Mean -1.708e-02 3435 of 5322 0.793
Cell Tubulin Mass Displacement 0.030 1297 of 5322 0.534
Cell Actin Mean -4.261e-02 4210 of 5322 0.407
Cell Tubulin - Actin Correlation 0.014 3006 of 5322 0.777
Cell DNA - Tubulin Correlation 0.046 2050 of 5322 0.197
Cell Shape Area 0.077 905 of 5322 0.149
Cell Shape Eccentricity -4.162e-02 5128 of 5322 0.491
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated -7.406e-02 4615 of 5322 0.965
Nucleus DNA Mean 0.048 2204 of 5322 1.000
Nucleus DNA Mass Displacement -8.739e-02 4599 of 5322 0.999
Nucleus DNA Mean Frac 3 -1.514e-01 4820 of 5322 1.000
Nucleus gH2AX Mean -7.718e-02 3997 of 5322 1.000
Nucleus gH2AX Mean Frac 0 0.120 792 of 5322 1.000
Nucleus Tubulin Mean Frac 0 -1.340e-01 4900 of 5322 0.999
Nucleus Tubulin Mean Edge 0.119 1613 of 5322 0.999
Nucleus Tubulin Std Edge 0.201 463 of 5322 0.999
Nucleus Shape Area -2.446e-02 4207 of 5322 0.990
Nucleus Shape Eccentricity -1.199e-01 3825 of 5322 1.000
Nucleus Shape Form Factor -4.799e-02 2082 of 5322 0.998
Cell Tubulin Mean 0.135 1617 of 5322 0.997
Cell Tubulin Mean Frac 3 0.066 1006 of 5322 0.999
Cell Actin Mean -9.667e-02 4372 of 5322 0.997
Cell Shape Area 0.028 3565 of 5322 0.999
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