SEC13

Gene symbol: SEC13
Gene: 6396
Uniprot Function: Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles (PubMed:8972206). Required for the exit of adipsin (CFD/ADN), an adipocyte-secreted protein from the endoplasmic reticulum (By similarity).
Mitotic Index 0.0193
Interphase Cluster: #104 (23 genes)
Mitotic Cluster: #110 (23 genes)
sgRNA 1: AGTCGTGTCCCGCATGCTCG (interphase cells: 757, mitotic cells: 14)
sgRNA 2: CCAGGATGTTGCCGTACATG (interphase cells: 693, mitotic cells: 16)
sgRNA 3: GGTGTCAGTAATTAACACTG (interphase cells: 1112, mitotic cells: 19)
sgRNA 4: TGCCAAGCTCAGCATACCTG (interphase cells: 2889, mitotic cells: 58)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated -1.012e-01 5252 of 5322 0.011
Nucleus DNA Mean 0.205 300 of 5322 1.505e-04
Nucleus gH2AX Mean 0.031 4011 of 5322 0.456
Nucleus DNA - gH2AX Correlation 0.049 355 of 5322 0.179
Nucleus Shape Area -3.400e-01 5135 of 5322 1.633e-04
Nucleus Shape Eccentricity -3.942e-01 5318 of 5322 4.529e-04
Nucleus Shape Form Factor -3.351e-03 709 of 5322 0.982
Nucleus Shape Solidity -1.251e-01 4664 of 5322 1.903e-04
Cell DNA Mass Displacement 0.017 3238 of 5322 0.841
Cell Tubulin Mean 0.005 2587 of 5322 0.910
Cell Tubulin Mass Displacement -9.215e-02 5103 of 5322 0.012
Cell Actin Mean -2.287e-02 3717 of 5322 0.736
Cell Tubulin - Actin Correlation -2.600e-02 4657 of 5322 0.630
Cell DNA - Tubulin Correlation -2.065e-01 5294 of 5322 1.948e-04
Cell Shape Area -1.896e-01 5002 of 5322 1.651e-04
Cell Shape Eccentricity -1.299e-02 4493 of 5322 0.926
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated 0.106 2380 of 5322 0.965
Nucleus DNA Mean -3.476e-02 3501 of 5322 1.000
Nucleus DNA Mass Displacement 0.277 334 of 5322 0.999
Nucleus DNA Mean Frac 3 -1.503e-01 4809 of 5322 1.000
Nucleus gH2AX Mean -8.258e-02 4058 of 5322 1.000
Nucleus gH2AX Mean Frac 0 0.095 1018 of 5322 1.000
Nucleus Tubulin Mean Frac 0 0.103 1942 of 5322 0.999
Nucleus Tubulin Mean Edge -1.032e-01 4362 of 5322 0.999
Nucleus Tubulin Std Edge 0.063 1700 of 5322 0.999
Nucleus Shape Area 0.123 2349 of 5322 0.989
Nucleus Shape Eccentricity -4.721e-01 5192 of 5322 0.891
Nucleus Shape Form Factor 0.162 183 of 5322 0.998
Cell Tubulin Mean -1.511e-02 3703 of 5322 0.998
Cell Tubulin Mean Frac 3 -8.269e-02 2712 of 5322 0.999
Cell Actin Mean -1.353e-01 4697 of 5322 0.997
Cell Shape Area 0.120 2326 of 5322 0.998
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