PGBD2

Gene symbol: PGBD2
Gene: 267002
Uniprot Function:
Mitotic Index 0.0252
Interphase Cluster: #89 (25 genes)
Mitotic Cluster: #26 (35 genes)
sgRNA 1: AGCCAAGAGCTGAGTCCCGT (interphase cells: 1406, mitotic cells: 43)
sgRNA 2: GACAGGAGCTTGGATCTAGG (interphase cells: 1495, mitotic cells: 32)
sgRNA 3: GTGAGTACTTTGGGCACCGG (interphase cells: 876, mitotic cells: 23)
sgRNA 4: TGCAAGTGATAGGTTTGCCA (interphase cells: 1605, mitotic cells: 41)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated 0.033 1553 of 5322 0.663
Nucleus DNA Mean -5.036e-03 2146 of 5322 0.964
Nucleus gH2AX Mean 0.123 1455 of 5322 0.005
Nucleus DNA - gH2AX Correlation -1.104e-01 4232 of 5322 4.253e-04
Nucleus Shape Area 0.019 2652 of 5322 0.859
Nucleus Shape Eccentricity -2.089e-02 4248 of 5322 0.715
Nucleus Shape Form Factor -7.025e-02 3559 of 5322 0.079
Nucleus Shape Solidity -3.472e-02 1976 of 5322 0.332
Cell DNA Mass Displacement 0.030 2288 of 5322 0.642
Cell Tubulin Mean -1.529e-02 3383 of 5322 0.833
Cell Tubulin Mass Displacement 0.015 2069 of 5322 0.829
Cell Actin Mean -2.521e-02 3788 of 5322 0.694
Cell Tubulin - Actin Correlation 0.011 3177 of 5322 0.833
Cell DNA - Tubulin Correlation 0.041 2196 of 5322 0.302
Cell Shape Area 0.040 1833 of 5322 0.617
Cell Shape Eccentricity 0.002 3540 of 5322 0.981
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated 0.091 2622 of 5322 0.965
Nucleus DNA Mean -1.315e-03 2977 of 5322 1.000
Nucleus DNA Mass Displacement 0.231 547 of 5322 0.999
Nucleus DNA Mean Frac 3 0.021 2773 of 5322 1.000
Nucleus gH2AX Mean -1.326e-01 4505 of 5322 1.000
Nucleus gH2AX Mean Frac 0 -5.493e-02 3159 of 5322 1.000
Nucleus Tubulin Mean Frac 0 -2.044e-01 5176 of 5322 0.999
Nucleus Tubulin Mean Edge 0.121 1604 of 5322 0.999
Nucleus Tubulin Std Edge 0.145 819 of 5322 0.999
Nucleus Shape Area 0.085 2867 of 5322 0.990
Nucleus Shape Eccentricity 0.120 673 of 5322 1.000
Nucleus Shape Form Factor -2.904e-01 4752 of 5322 0.929
Cell Tubulin Mean -1.907e-01 5039 of 5322 0.975
Cell Tubulin Mean Frac 3 -1.188e-02 1811 of 5322 0.999
Cell Actin Mean -1.445e-02 3405 of 5322 0.999
Cell Shape Area -3.388e-02 4280 of 5322 0.998
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