NUP85

Gene symbol: NUP85
Gene: 79902
Uniprot Function: Essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance (PubMed:12718872). As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP96/Nup98 and NUP153 to the nucleus (PubMed:12718872). The Nup107-160 complex seems to be required for spindle assembly during mitosis (PubMed:16807356). NUP85 is required for membrane clustering of CCL2-activated CCR2 (PubMed:15995708). Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol 3-kinase-Rac-lammellipodium protrusion cascade (PubMed:15995708). Involved in nephrogenesis (PubMed:30179222).
Mitotic Index 0.0268
Interphase Cluster: #104 (23 genes)
Mitotic Cluster: #127 (21 genes)
sgRNA 1: AGGCATATGCCGAATCATGG (interphase cells: 1061, mitotic cells: 33)
sgRNA 2: CTTTATCTATATCATCCGTA (interphase cells: 1772, mitotic cells: 43)
sgRNA 3: GCCGGACCCAGTCAAGGAGA (interphase cells: 1214, mitotic cells: 37)
sgRNA 4: GCTGCTAAAGATCCAGCCAA (interphase cells: 1434, mitotic cells: 38)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated -1.187e-01 5288 of 5322 5.407e-04
Nucleus DNA Mean 0.033 1086 of 5322 0.427
Nucleus gH2AX Mean 0.029 4058 of 5322 0.465
Nucleus DNA - gH2AX Correlation -7.007e-02 3107 of 5322 0.015
Nucleus Shape Area -1.990e-01 5040 of 5322 1.633e-04
Nucleus Shape Eccentricity -3.389e-01 5315 of 5322 4.529e-04
Nucleus Shape Form Factor 0.020 290 of 5322 0.505
Nucleus Shape Solidity -4.740e-02 2583 of 5322 0.174
Cell DNA Mass Displacement 0.006 3999 of 5322 0.969
Cell Tubulin Mean 0.027 1750 of 5322 0.546
Cell Tubulin Mass Displacement 0.002 2861 of 5322 0.981
Cell Actin Mean 0.013 2571 of 5322 0.820
Cell Tubulin - Actin Correlation 0.078 812 of 5322 0.046
Cell DNA - Tubulin Correlation -1.085e-01 5219 of 5322 0.001
Cell Shape Area -1.915e-01 5007 of 5322 1.651e-04
Cell Shape Eccentricity 0.020 2104 of 5322 0.815
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated 0.103 2437 of 5322 0.965
Nucleus DNA Mean -8.080e-02 4079 of 5322 1.000
Nucleus DNA Mass Displacement 0.025 3122 of 5322 0.999
Nucleus DNA Mean Frac 3 -4.385e-01 5307 of 5322 0.640
Nucleus gH2AX Mean -2.221e-01 5011 of 5322 1.000
Nucleus gH2AX Mean Frac 0 0.113 848 of 5322 1.000
Nucleus Tubulin Mean Frac 0 -7.365e-02 4442 of 5322 0.999
Nucleus Tubulin Mean Edge -2.234e-02 3475 of 5322 0.999
Nucleus Tubulin Std Edge -7.040e-02 3537 of 5322 0.999
Nucleus Shape Area -1.526e-01 5036 of 5322 0.930
Nucleus Shape Eccentricity -6.728e-02 3133 of 5322 1.000
Nucleus Shape Form Factor -1.909e-01 4048 of 5322 0.998
Cell Tubulin Mean -1.473e-01 4883 of 5322 0.997
Cell Tubulin Mean Frac 3 -1.617e-01 3668 of 5322 0.999
Cell Actin Mean 0.081 2134 of 5322 0.997
Cell Shape Area 0.023 3621 of 5322 0.999
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