CDC42SE1

Gene symbol: CDC42SE1
Gene: 56882
Uniprot Function: Probably involved in the organization of the actin cytoskeleton by acting downstream of CDC42, inducing actin filament assembly. Alters CDC42-induced cell shape changes. In activated T-cells, may play a role in CDC42-mediated F-actin accumulation at the immunological synapse. May play a role in early contractile events in phagocytosis in macrophages.
Mitotic Index 0.0231
Interphase Cluster: #187 (14 genes)
Mitotic Cluster: #116 (23 genes)
sgRNA 1: AGAAGAGAAGACGGATTGAC (interphase cells: 1737, mitotic cells: 41)
sgRNA 2: GATTGACCGGACCATGATTG (interphase cells: 1678, mitotic cells: 46)
sgRNA 3: TGTGGTAGAGAAACCCCAGC (interphase cells: 377, mitotic cells: 13)
sgRNA 4: TTTGTTCACCTGACTCACAT (interphase cells: 1447, mitotic cells: 24)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated -1.033e-02 3635 of 5322 0.882
Nucleus DNA Mean -6.252e-03 2191 of 5322 0.950
Nucleus gH2AX Mean 0.154 971 of 5322 8.823e-04
Nucleus DNA - gH2AX Correlation -6.528e-02 2942 of 5322 0.036
Nucleus Shape Area 0.006 3080 of 5322 0.987
Nucleus Shape Eccentricity -4.202e-02 4730 of 5322 0.368
Nucleus Shape Form Factor -4.953e-02 2657 of 5322 0.248
Nucleus Shape Solidity -6.435e-02 3304 of 5322 0.077
Cell DNA Mass Displacement 0.041 1589 of 5322 0.520
Cell Tubulin Mean 0.002 2686 of 5322 0.938
Cell Tubulin Mass Displacement -2.790e-02 4317 of 5322 0.667
Cell Actin Mean 0.075 1117 of 5322 0.131
Cell Tubulin - Actin Correlation 0.066 1023 of 5322 0.127
Cell DNA - Tubulin Correlation 0.046 2028 of 5322 0.263
Cell Shape Area -5.160e-03 3387 of 5322 0.867
Cell Shape Eccentricity -1.181e-02 4424 of 5322 0.936
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated 0.038 3417 of 5322 0.996
Nucleus DNA Mean -6.894e-02 3943 of 5322 1.000
Nucleus DNA Mass Displacement 0.066 2437 of 5322 0.999
Nucleus DNA Mean Frac 3 -4.024e-02 3717 of 5322 1.000
Nucleus gH2AX Mean 0.064 2055 of 5322 1.000
Nucleus gH2AX Mean Frac 0 -1.229e-02 2468 of 5322 1.000
Nucleus Tubulin Mean Frac 0 0.063 2545 of 5322 0.999
Nucleus Tubulin Mean Edge 0.148 1283 of 5322 0.999
Nucleus Tubulin Std Edge 0.097 1294 of 5322 0.999
Nucleus Shape Area 0.004 3891 of 5322 0.990
Nucleus Shape Eccentricity 0.248 99 of 5322 1.000
Nucleus Shape Form Factor 0.244 63 of 5322 0.976
Cell Tubulin Mean -6.171e-02 4225 of 5322 0.997
Cell Tubulin Mean Frac 3 0.153 408 of 5322 0.999
Cell Actin Mean -2.334e-01 5129 of 5322 0.997
Cell Shape Area 0.193 1468 of 5322 0.994
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