ABHD17A

Due to sgRNA sequence design constraints two or more of the sgRNAs used to target this gene have multiple genomic target sites, potentially impacting the observed phenotype through increased DNA damage.
Gene symbol: ABHD17A
Gene: 81926
Uniprot Function: Hydrolyzes fatty acids from S-acylated cysteine residues in proteins (PubMed:26701913). Has depalmitoylating activity towards NRAS (PubMed:26701913). Has depalmitoylating activity towards DLG4/PSD95 (PubMed:26701913). May have depalmitoylating activity towards MAP6 (By similarity).
Mitotic Index 0.0271
Interphase Cluster: #3 (49 genes)
Mitotic Cluster: #122 (22 genes)
sgRNA 1: ACCCTCCCGCAGCATCGAGA (interphase cells: 524, mitotic cells: 12)
sgRNA 2: ACCGTAGCCGGAGTAGTCGT (interphase cells: 666, mitotic cells: 18)
sgRNA 3: AGGCTCTCAGGGTCCCCAAG (interphase cells: 1398, mitotic cells: 29)
sgRNA 4: GCGCGAGCTGGACACCATCG (interphase cells: 1400, mitotic cells: 52)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated 0.043 1218 of 5322 0.594
Nucleus DNA Mean -1.402e-01 4903 of 5322 9.193e-04
Nucleus gH2AX Mean 0.336 229 of 5322 1.367e-04
Nucleus DNA - gH2AX Correlation -2.859e-01 5263 of 5322 1.021e-04
Nucleus Shape Area 0.150 386 of 5322 0.005
Nucleus Shape Eccentricity 0.095 234 of 5322 0.018
Nucleus Shape Form Factor -1.982e-01 5184 of 5322 2.872e-04
Nucleus Shape Solidity -1.961e-01 5096 of 5322 1.903e-04
Cell DNA Mass Displacement 0.026 2571 of 5322 0.741
Cell Tubulin Mean 0.013 2261 of 5322 0.808
Cell Tubulin Mass Displacement 0.020 1801 of 5322 0.802
Cell Actin Mean -6.394e-02 4584 of 5322 0.232
Cell Tubulin - Actin Correlation 0.032 2130 of 5322 0.556
Cell DNA - Tubulin Correlation 0.127 656 of 5322 0.003
Cell Shape Area 0.122 439 of 5322 0.021
Cell Shape Eccentricity 0.040 926 of 5322 0.603
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated 0.095 2566 of 5322 0.965
Nucleus DNA Mean -2.747e-02 3400 of 5322 1.000
Nucleus DNA Mass Displacement 0.370 114 of 5322 0.999
Nucleus DNA Mean Frac 3 0.311 184 of 5322 1.000
Nucleus gH2AX Mean 0.027 2552 of 5322 1.000
Nucleus gH2AX Mean Frac 0 -2.334e-01 4966 of 5322 1.000
Nucleus Tubulin Mean Frac 0 -1.839e-01 5116 of 5322 0.999
Nucleus Tubulin Mean Edge 0.055 2432 of 5322 0.999
Nucleus Tubulin Std Edge -9.508e-02 3831 of 5322 0.999
Nucleus Shape Area -5.525e-02 4505 of 5322 0.990
Nucleus Shape Eccentricity 0.086 996 of 5322 1.000
Nucleus Shape Form Factor -2.444e-01 4496 of 5322 0.981
Cell Tubulin Mean 0.146 1486 of 5322 0.997
Cell Tubulin Mean Frac 3 -1.167e-01 3138 of 5322 0.999
Cell Actin Mean 0.012 3040 of 5322 1.000
Cell Shape Area 0.047 3328 of 5322 0.998
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