SMC1A

Gene symbol: SMC1A
Gene: 8243
Uniprot Function: Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis. Involved in DNA repair via its interaction with BRCA1 and its related phosphorylation by ATM, or via its phosphorylation by ATR. Works as a downstream effector both in the ATM/NBS1 branch and in the ATR/MSH2 branch of S-phase checkpoint.
Mitotic Index 0.0281
Interphase Cluster: #218 (7 genes)
Mitotic Cluster: #4 (52 genes)
sgRNA 1: AGATTATCGGACCATTTCAG (interphase cells: 2159, mitotic cells: 61)
sgRNA 2: CTCTTGATATCATTAATGCG (interphase cells: 1311, mitotic cells: 34)
sgRNA 3: TCAGGGCAGAGATTTGACGT (interphase cells: 1098, mitotic cells: 31)
sgRNA 4: TTGCCCGTGTCATTGTAGGT (interphase cells: 1345, mitotic cells: 45)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated 0.010 2625 of 5322 0.939
Nucleus DNA Mean 0.007 1751 of 5322 0.854
Nucleus gH2AX Mean 0.087 2298 of 5322 0.028
Nucleus DNA - gH2AX Correlation -1.198e-01 4397 of 5322 1.904e-04
Nucleus Shape Area 0.045 1801 of 5322 0.480
Nucleus Shape Eccentricity 0.118 110 of 5322 0.002
Nucleus Shape Form Factor -5.294e-02 2833 of 5322 0.181
Nucleus Shape Solidity -5.588e-02 2992 of 5322 0.097
Cell DNA Mass Displacement 0.095 239 of 5322 0.022
Cell Tubulin Mean -9.636e-02 4875 of 5322 0.028
Cell Tubulin Mass Displacement 0.036 1028 of 5322 0.483
Cell Actin Mean -2.002e-01 5222 of 5322 1.723e-04
Cell Tubulin - Actin Correlation -4.387e-02 4955 of 5322 0.289
Cell DNA - Tubulin Correlation -4.394e-01 5319 of 5322 1.948e-04
Cell Shape Area -7.503e-02 4649 of 5322 0.063
Cell Shape Eccentricity 0.054 486 of 5322 0.305
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated 0.050 3239 of 5322 0.989
Nucleus DNA Mean 0.094 1555 of 5322 1.000
Nucleus DNA Mass Displacement 0.110 1770 of 5322 0.999
Nucleus DNA Mean Frac 3 0.110 1446 of 5322 1.000
Nucleus gH2AX Mean -1.869e-01 4861 of 5322 1.000
Nucleus gH2AX Mean Frac 0 -7.166e-02 3380 of 5322 1.000
Nucleus Tubulin Mean Frac 0 -2.617e-02 3863 of 5322 0.999
Nucleus Tubulin Mean Edge 0.175 1037 of 5322 0.996
Nucleus Tubulin Std Edge 0.201 462 of 5322 0.999
Nucleus Shape Area -7.945e-02 4679 of 5322 0.989
Nucleus Shape Eccentricity -6.663e-03 2220 of 5322 1.000
Nucleus Shape Form Factor -3.831e-02 1933 of 5322 0.998
Cell Tubulin Mean 0.066 2561 of 5322 0.997
Cell Tubulin Mean Frac 3 0.023 1415 of 5322 0.999
Cell Actin Mean -3.395e-01 5250 of 5322 0.509
Cell Shape Area 0.004 3854 of 5322 0.999
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