RER1

Gene symbol: RER1
Gene: 11079
Uniprot Function: Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
Mitotic Index 0.029
Interphase Cluster: #84 (26 genes)
Mitotic Cluster: #140 (20 genes)
sgRNA 1: ACCCATCGCACAGCCGTGTA (interphase cells: 1932, mitotic cells: 47)
sgRNA 2: ATGGTAGATCCCCAAGGCAT (interphase cells: 2383, mitotic cells: 63)
sgRNA 3: CGTCCATGGGAAACCTTCGG (interphase cells: 1354, mitotic cells: 56)
sgRNA 4: GCTACCCACCAAACAGAACG (interphase cells: 2974, mitotic cells: 92)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated 0.072 616 of 5322 0.160
Nucleus DNA Mean -1.895e-02 2601 of 5322 0.717
Nucleus gH2AX Mean 0.108 1751 of 5322 0.006
Nucleus DNA - gH2AX Correlation -2.487e-02 1555 of 5322 0.344
Nucleus Shape Area 0.031 2246 of 5322 0.656
Nucleus Shape Eccentricity -8.562e-03 3758 of 5322 0.908
Nucleus Shape Form Factor -1.708e-02 1144 of 5322 0.711
Nucleus Shape Solidity 0.001 603 of 5322 0.954
Cell DNA Mass Displacement 0.008 3902 of 5322 0.932
Cell Tubulin Mean 0.027 1753 of 5322 0.507
Cell Tubulin Mass Displacement 0.012 2253 of 5322 0.852
Cell Actin Mean 0.015 2513 of 5322 0.771
Cell Tubulin - Actin Correlation 0.035 1990 of 5322 0.382
Cell DNA - Tubulin Correlation 0.025 2797 of 5322 0.525
Cell Shape Area 0.022 2414 of 5322 0.855
Cell Shape Eccentricity 0.033 1266 of 5322 0.561
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated -2.134e-02 4188 of 5322 0.993
Nucleus DNA Mean 0.028 2510 of 5322 1.000
Nucleus DNA Mass Displacement 0.262 406 of 5322 0.999
Nucleus DNA Mean Frac 3 -1.943e-02 3419 of 5322 1.000
Nucleus gH2AX Mean 0.037 2433 of 5322 1.000
Nucleus gH2AX Mean Frac 0 0.005 2200 of 5322 1.000
Nucleus Tubulin Mean Frac 0 0.018 3212 of 5322 0.999
Nucleus Tubulin Mean Edge -1.631e-02 3404 of 5322 0.999
Nucleus Tubulin Std Edge -2.560e-02 2914 of 5322 0.999
Nucleus Shape Area 0.033 3568 of 5322 0.990
Nucleus Shape Eccentricity -2.805e-02 2533 of 5322 1.000
Nucleus Shape Form Factor -8.428e-02 2628 of 5322 0.998
Cell Tubulin Mean 0.171 1216 of 5322 0.994
Cell Tubulin Mean Frac 3 0.006 1625 of 5322 0.999
Cell Actin Mean 0.066 2314 of 5322 0.997
Cell Shape Area 0.030 3539 of 5322 0.999
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