PDE4DIP

Due to sgRNA sequence design constraints two or more of the sgRNAs used to target this gene have multiple genomic target sites, potentially impacting the observed phenotype through increased DNA damage.
Gene symbol: PDE4DIP
Gene: 9659
Uniprot Function: Functions as an anchor sequestering components of the cAMP-dependent pathway to Golgi and/or centrosomes (By similarity).
Mitotic Index 0.03
Interphase Cluster: #161 (17 genes)
Mitotic Cluster: #116 (23 genes)
sgRNA 1: AGCGTCTACAGCGAAAGGAA (interphase cells: 854, mitotic cells: 25)
sgRNA 2: AGTCAGCGTTTAGCCTACCA (interphase cells: 876, mitotic cells: 23)
sgRNA 3: AGTTCTGGTTAATGGAGGAG (interphase cells: 1500, mitotic cells: 63)
sgRNA 4: GGTAGGCTAAACGCTGACTG (interphase cells: 1431, mitotic cells: 33)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated -5.382e-02 4931 of 5322 0.282
Nucleus DNA Mean 0.023 1304 of 5322 0.618
Nucleus gH2AX Mean 0.244 415 of 5322 1.367e-04
Nucleus DNA - gH2AX Correlation -1.018e-01 4013 of 5322 8.875e-04
Nucleus Shape Area -9.026e-02 4795 of 5322 0.024
Nucleus Shape Eccentricity -8.095e-02 5042 of 5322 0.030
Nucleus Shape Form Factor -1.624e-01 5061 of 5322 2.872e-04
Nucleus Shape Solidity -1.875e-01 5065 of 5322 1.903e-04
Cell DNA Mass Displacement 0.053 1004 of 5322 0.346
Cell Tubulin Mean 0.015 2159 of 5322 0.766
Cell Tubulin Mass Displacement -8.533e-03 3500 of 5322 0.928
Cell Actin Mean 0.052 1514 of 5322 0.308
Cell Tubulin - Actin Correlation 0.037 1906 of 5322 0.434
Cell DNA - Tubulin Correlation 0.015 3231 of 5322 0.773
Cell Shape Area -6.824e-02 4600 of 5322 0.110
Cell Shape Eccentricity 0.023 1912 of 5322 0.795
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated 0.198 1275 of 5322 0.875
Nucleus DNA Mean 0.100 1473 of 5322 1.000
Nucleus DNA Mass Displacement 0.183 907 of 5322 0.999
Nucleus DNA Mean Frac 3 0.004 3060 of 5322 1.000
Nucleus gH2AX Mean 0.183 868 of 5322 1.000
Nucleus gH2AX Mean Frac 0 0.055 1484 of 5322 1.000
Nucleus Tubulin Mean Frac 0 0.149 1341 of 5322 0.999
Nucleus Tubulin Mean Edge 0.035 2692 of 5322 0.999
Nucleus Tubulin Std Edge -7.945e-02 3656 of 5322 0.999
Nucleus Shape Area 0.136 2169 of 5322 0.989
Nucleus Shape Eccentricity 0.033 1603 of 5322 1.000
Nucleus Shape Form Factor -1.199e-01 3128 of 5322 0.998
Cell Tubulin Mean -1.416e-01 4840 of 5322 0.997
Cell Tubulin Mean Frac 3 -1.876e-01 3938 of 5322 0.999
Cell Actin Mean 0.022 2906 of 5322 0.998
Cell Shape Area 0.029 3552 of 5322 0.999
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