NIPBL

Gene symbol: NIPBL
Gene: 25836
Uniprot Function: Plays an important role in the loading of the cohesin complex on to DNA. Forms a heterodimeric complex (also known as cohesin loading complex) with MAU2/SCC4 which mediates the loading of the cohesin complex onto chromatin (PubMed:22628566, PubMed:28914604). Plays a role in cohesin loading at sites of DNA damage. Its recruitment to double-strand breaks (DSBs) sites occurs in a CBX3-, RNF8- and RNF168-dependent manner whereas its recruitment to UV irradiation-induced DNA damage sites occurs in a ATM-, ATR-, RNF8- and RNF168-dependent manner (PubMed:28167679). Along with ZNF609, promotes cortical neuron migration during brain development by regulating the transcription of crucial genes in this process. Preferentially binds promoters containing paused RNA polymerase II. Up-regulates the expression of SEMA3A, NRP1, PLXND1 and GABBR2 genes, among others (By similarity).
Mitotic Index 0.0317
Interphase Cluster: #218 (7 genes)
Mitotic Cluster: #30 (33 genes)
sgRNA 1: AAGTGAGGACTACCTACACA (interphase cells: 2437, mitotic cells: 82)
sgRNA 2: CTTTAGCTTGATATGCAACG (interphase cells: 1132, mitotic cells: 40)
sgRNA 3: TATACGAACTAACCTCCATG (interphase cells: 1767, mitotic cells: 66)
sgRNA 4: TGAGACTGATCCTTCACTAG (interphase cells: 652, mitotic cells: 8)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 36.43 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated -9.417e-02 5231 of 5322 0.018
Nucleus DNA Mean 0.038 984 of 5322 0.356
Nucleus gH2AX Mean 0.268 353 of 5322 1.367e-04
Nucleus DNA - gH2AX Correlation -4.565e-01 5313 of 5322 1.021e-04
Nucleus Shape Area -6.891e-02 4662 of 5322 0.087
Nucleus Shape Eccentricity 0.211 16 of 5322 4.529e-04
Nucleus Shape Form Factor -1.784e-01 5132 of 5322 2.872e-04
Nucleus Shape Solidity -2.734e-01 5269 of 5322 1.903e-04
Cell DNA Mass Displacement 0.255 15 of 5322 0.001
Cell Tubulin Mean 0.133 320 of 5322 7.584e-04
Cell Tubulin Mass Displacement 0.099 188 of 5322 0.007
Cell Actin Mean 0.145 510 of 5322 1.723e-04
Cell Tubulin - Actin Correlation -5.300e-02 5049 of 5322 0.192
Cell DNA - Tubulin Correlation -3.999e-01 5317 of 5322 1.948e-04
Cell Shape Area -2.171e-01 5041 of 5322 1.651e-04
Cell Shape Eccentricity 0.113 32 of 5322 0.015
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated -2.720e-01 5253 of 5322 0.691
Nucleus DNA Mean -4.647e-02 3667 of 5322 1.000
Nucleus DNA Mass Displacement 0.004 3464 of 5322 0.999
Nucleus DNA Mean Frac 3 0.085 1785 of 5322 1.000
Nucleus gH2AX Mean 0.040 2392 of 5322 1.000
Nucleus gH2AX Mean Frac 0 -1.885e-01 4719 of 5322 1.000
Nucleus Tubulin Mean Frac 0 -2.060e-01 5181 of 5322 0.999
Nucleus Tubulin Mean Edge 0.373 147 of 5322 0.656
Nucleus Tubulin Std Edge 0.337 111 of 5322 0.670
Nucleus Shape Area -3.083e-01 5279 of 5322 0.515
Nucleus Shape Eccentricity 0.051 1368 of 5322 1.000
Nucleus Shape Form Factor -2.224e-01 4317 of 5322 0.978
Cell Tubulin Mean 0.214 860 of 5322 0.975
Cell Tubulin Mean Frac 3 0.198 239 of 5322 0.999
Cell Actin Mean 0.207 849 of 5322 0.997
Cell Shape Area -1.380e-01 4983 of 5322 0.994
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