ERCC6L

Due to sgRNA sequence design constraints two or more of the sgRNAs used to target this gene have multiple genomic target sites, potentially impacting the observed phenotype through increased DNA damage.
Gene symbol: ERCC6L
Gene: 54821
Uniprot Function: DNA helicase that acts as an essential component of the spindle assembly checkpoint. Contributes to the mitotic checkpoint by recruiting MAD2 to kinetochores and monitoring tension on centromeric chromatin (PubMed:17218258). Acts as a tension sensor that associates with catenated DNA which is stretched under tension until it is resolved during anaphase (PubMed:17218258, PubMed:23973328). Functions as ATP-dependent DNA translocase (PubMed:23973328, PubMed:28977671). Can promote Holliday junction branch migration (in vitro) (PubMed:23973328).
Mitotic Index 0.0303
Interphase Cluster: #67 (29 genes)
Mitotic Cluster: #18 (40 genes)
sgRNA 1: AACCTTTCATGGTCCTAGCA (interphase cells: 2306, mitotic cells: 64)
sgRNA 2: TCATTAATAAGACAAACTAC (interphase cells: 1127, mitotic cells: 38)
sgRNA 3: TCTAAGTACTCATCATACTC (interphase cells: 452, mitotic cells: 17)
sgRNA 4: TTAAGACATTGCGAATCGAT (interphase cells: 820, mitotic cells: 28)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated -1.372e-02 3772 of 5322 0.848
Nucleus DNA Mean 0.081 580 of 5322 0.059
Nucleus gH2AX Mean 0.101 1911 of 5322 0.023
Nucleus DNA - gH2AX Correlation -1.381e-02 1255 of 5322 0.657
Nucleus Shape Area -1.315e-02 3704 of 5322 0.761
Nucleus Shape Eccentricity 0.002 3212 of 5322 0.946
Nucleus Shape Form Factor -8.878e-03 875 of 5322 0.925
Nucleus Shape Solidity -4.725e-02 2572 of 5322 0.216
Cell DNA Mass Displacement -7.083e-02 5317 of 5322 0.110
Cell Tubulin Mean 0.094 527 of 5322 0.030
Cell Tubulin Mass Displacement -6.073e-02 4920 of 5322 0.196
Cell Actin Mean 0.055 1440 of 5322 0.301
Cell Tubulin - Actin Correlation 0.006 3427 of 5322 0.924
Cell DNA - Tubulin Correlation -2.670e-02 4633 of 5322 0.561
Cell Shape Area -5.053e-02 4379 of 5322 0.275
Cell Shape Eccentricity -8.594e-03 4263 of 5322 0.965
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated -4.473e-02 4391 of 5322 0.983
Nucleus DNA Mean -3.663e-02 3535 of 5322 1.000
Nucleus DNA Mass Displacement 0.287 295 of 5322 0.999
Nucleus DNA Mean Frac 3 0.209 555 of 5322 1.000
Nucleus gH2AX Mean 0.010 2822 of 5322 1.000
Nucleus gH2AX Mean Frac 0 -1.719e-01 4582 of 5322 1.000
Nucleus Tubulin Mean Frac 0 0.080 2268 of 5322 0.999
Nucleus Tubulin Mean Edge 0.189 896 of 5322 0.996
Nucleus Tubulin Std Edge -1.009e-01 3900 of 5322 0.999
Nucleus Shape Area 0.067 3098 of 5322 0.990
Nucleus Shape Eccentricity -1.079e-01 3680 of 5322 1.000
Nucleus Shape Form Factor -7.095e-02 2416 of 5322 0.998
Cell Tubulin Mean 0.039 2960 of 5322 0.997
Cell Tubulin Mean Frac 3 -1.350e-01 3363 of 5322 0.999
Cell Actin Mean -7.111e-03 3305 of 5322 1.000
Cell Shape Area -2.819e-02 4231 of 5322 0.998
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