AMD1

Gene symbol: AMD1
Gene: 262
Uniprot Function: Essential for biosynthesis of the polyamines spermidine and spermine. Promotes maintenance and self-renewal of embryonic stem cells, by maintaining spermine levels.
Mitotic Index 0.0243
Interphase Cluster: #104 (23 genes)
Mitotic Cluster: #123 (23 genes)
sgRNA 1: AAGCTTGCTAGGGATTACAG (interphase cells: 2251, mitotic cells: 64)
sgRNA 2: AATTCCGGTGTGGGTACCCT (interphase cells: 799, mitotic cells: 15)
sgRNA 3: CCCACAAGGATTGAACATTG (interphase cells: 2594, mitotic cells: 62)
sgRNA 4: GGGATCTTCGCACTATCCCA (interphase cells: 976, mitotic cells: 24)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated -9.951e-02 5245 of 5322 0.008
Nucleus DNA Mean 0.049 848 of 5322 0.232
Nucleus gH2AX Mean 0.042 3731 of 5322 0.277
Nucleus DNA - gH2AX Correlation 0.007 808 of 5322 0.911
Nucleus Shape Area -2.156e-01 5055 of 5322 1.633e-04
Nucleus Shape Eccentricity -1.248e-01 5172 of 5322 4.529e-04
Nucleus Shape Form Factor -4.641e-02 2498 of 5322 0.244
Nucleus Shape Solidity -1.410e-01 4828 of 5322 1.903e-04
Cell DNA Mass Displacement 0.031 2213 of 5322 0.626
Cell Tubulin Mean -1.098e-01 4943 of 5322 0.008
Cell Tubulin Mass Displacement -4.666e-02 4737 of 5322 0.292
Cell Actin Mean -2.376e-04 3008 of 5322 0.983
Cell Tubulin - Actin Correlation 0.007 3336 of 5322 0.886
Cell DNA - Tubulin Correlation 0.018 3116 of 5322 0.707
Cell Shape Area -1.408e-01 4916 of 5322 1.651e-04
Cell Shape Eccentricity -1.710e-02 4644 of 5322 0.880
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated 0.199 1259 of 5322 0.873
Nucleus DNA Mean 0.042 2285 of 5322 1.000
Nucleus DNA Mass Displacement -1.147e-01 4816 of 5322 0.999
Nucleus DNA Mean Frac 3 -1.675e-01 4899 of 5322 1.000
Nucleus gH2AX Mean -3.958e-02 3500 of 5322 1.000
Nucleus gH2AX Mean Frac 0 0.206 307 of 5322 1.000
Nucleus Tubulin Mean Frac 0 -1.537e-02 3726 of 5322 0.999
Nucleus Tubulin Mean Edge -1.133e-01 4428 of 5322 0.999
Nucleus Tubulin Std Edge -1.484e-01 4346 of 5322 0.999
Nucleus Shape Area 0.033 3575 of 5322 0.990
Nucleus Shape Eccentricity 0.045 1432 of 5322 1.000
Nucleus Shape Form Factor -7.254e-02 2438 of 5322 0.998
Cell Tubulin Mean -8.051e-02 4421 of 5322 0.997
Cell Tubulin Mean Frac 3 -1.879e-02 1912 of 5322 0.999
Cell Actin Mean -7.097e-02 4102 of 5322 0.997
Cell Shape Area -3.901e-03 3951 of 5322 0.998
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