ABT1

Gene symbol: ABT1
Gene: 29777
Uniprot Function: Could be a novel TATA-binding protein (TBP) which can function as a basal transcription activator. Can act as a regulator of basal transcription for class II genes (By similarity).
Mitotic Index 0.0224
Interphase Cluster: #21 (39 genes)
Mitotic Cluster: #67 (29 genes)
sgRNA 1: AGAACAGACACTAGATGCGG (interphase cells: 1891, mitotic cells: 47)
sgRNA 2: GAATCCGAAGAAGCGGCCTG (interphase cells: 2092, mitotic cells: 49)
sgRNA 3: GACGCGTCCGACCTCGCCAT (interphase cells: 69, mitotic cells: 3)
sgRNA 4: GTTCCAAAGATCATAACGGA (interphase cells: 1265, mitotic cells: 23)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated -3.809e-02 4621 of 5322 0.586
Nucleus DNA Mean 0.269 240 of 5322 1.505e-04
Nucleus gH2AX Mean 0.205 550 of 5322 1.367e-04
Nucleus DNA - gH2AX Correlation 0.062 299 of 5322 0.121
Nucleus Shape Area -3.120e-01 5118 of 5322 1.633e-04
Nucleus Shape Eccentricity -1.646e-02 4097 of 5322 0.831
Nucleus Shape Form Factor -1.019e-02 916 of 5322 0.904
Nucleus Shape Solidity -1.337e-01 4752 of 5322 0.002
Cell DNA Mass Displacement 3.758e-04 4347 of 5322 0.980
Cell Tubulin Mean 0.036 1482 of 5322 0.500
Cell Tubulin Mass Displacement -5.255e-02 4826 of 5322 0.344
Cell Actin Mean 0.128 603 of 5322 0.013
Cell Tubulin - Actin Correlation 0.127 390 of 5322 0.006
Cell DNA - Tubulin Correlation 0.297 159 of 5322 1.948e-04
Cell Shape Area -2.682e-01 5102 of 5322 1.651e-04
Cell Shape Eccentricity 0.043 793 of 5322 0.585
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated 0.229 1003 of 5322 0.875
Nucleus DNA Mean 0.250 369 of 5322 1.000
Nucleus DNA Mass Displacement -1.743e-01 5121 of 5322 0.999
Nucleus DNA Mean Frac 3 -6.329e-02 4010 of 5322 1.000
Nucleus gH2AX Mean 0.185 847 of 5322 1.000
Nucleus gH2AX Mean Frac 0 0.085 1138 of 5322 1.000
Nucleus Tubulin Mean Frac 0 -3.429e-02 3985 of 5322 0.999
Nucleus Tubulin Mean Edge -6.673e-02 3991 of 5322 0.999
Nucleus Tubulin Std Edge 0.090 1372 of 5322 0.999
Nucleus Shape Area 0.050 3342 of 5322 0.990
Nucleus Shape Eccentricity 0.061 1244 of 5322 1.000
Nucleus Shape Form Factor -8.094e-03 1498 of 5322 0.998
Cell Tubulin Mean -1.301e-01 4777 of 5322 0.997
Cell Tubulin Mean Frac 3 -2.012e-01 4081 of 5322 0.999
Cell Actin Mean -3.009e-02 3637 of 5322 0.997
Cell Shape Area 0.069 3030 of 5322 0.998
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