AARS1

Gene symbol: AARS1
Gene: 16
Uniprot Function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala) (PubMed:27622773, PubMed:27911835, PubMed:28493438). Also edits incorrectly charged tRNA(Ala) via its editing domain (PubMed:27622773, PubMed:27911835, PubMed:28493438).
Mitotic Index 0.0231
Interphase Cluster: #166 (17 genes)
Mitotic Cluster: #49 (30 genes)
sgRNA 1: CCAAGAAAAGCATTGACACA (interphase cells: 2662, mitotic cells: 59)
sgRNA 2: GAAGGATAACTTCTGGGAGA (interphase cells: 1320, mitotic cells: 27)
sgRNA 3: GCAGTGAGATCCACTACGAC (interphase cells: 720, mitotic cells: 22)
sgRNA 4: GGCCTGACAACACAGGGCGT (interphase cells: 1179, mitotic cells: 31)

Interphase Cluster

Mitotic Cluster

Overview

Each montage below shows randomly selected individual cell images for the same target gene separated by sgRNA, along with an example montage of cells expressing a non-targeting negative control sgRNA at the bottom. sgRNA labels in the montages correspond to the numbered sgRNA sequences in the gene info table above. The DNA (blue) and tubulin (green) channels are displayed by default, with gH2AX (grayscale) and actin (yellow) available using the check boxes. Channel brightness, contrast, and opacity are adjustable by clicking the arrow next to the channel name. When only one channel is selected, the display defaults to grayscale. Click the “Zoom” checkbox above the channel controls to enable image zooming (via scrolling) and panning (via click-and-drag).

The cell boxes displayed for this gene are square, 30.36 μm per side for the interphase montage and 30.36 μm per side for the mitotic montage.

Features

Interphase Score Rank FDR q-value
Nucleus DNA Integrated 0.014 2421 of 5322 0.891
Nucleus DNA Mean -7.674e-02 4223 of 5322 0.069
Nucleus gH2AX Mean -3.733e-03 4654 of 5322 0.903
Nucleus DNA - gH2AX Correlation -1.310e-02 1235 of 5322 0.643
Nucleus Shape Area 0.037 2052 of 5322 0.603
Nucleus Shape Eccentricity 0.039 1332 of 5322 0.346
Nucleus Shape Form Factor -9.816e-02 4340 of 5322 0.013
Nucleus Shape Solidity -7.863e-02 3775 of 5322 0.027
Cell DNA Mass Displacement -8.251e-04 4411 of 5322 0.963
Cell Tubulin Mean -1.489e-01 5083 of 5322 7.584e-04
Cell Tubulin Mass Displacement -4.807e-02 4765 of 5322 0.300
Cell Actin Mean -2.409e-01 5262 of 5322 1.723e-04
Cell Tubulin - Actin Correlation -1.242e-01 5277 of 5322 0.002
Cell DNA - Tubulin Correlation -1.109e-02 4206 of 5322 0.814
Cell Shape Area 0.016 2643 of 5322 0.937
Cell Shape Eccentricity 0.054 468 of 5322 0.325
Mitotic Score Rank FDR q-value
Nucleus DNA Integrated 0.216 1118 of 5322 0.837
Nucleus DNA Mean 0.095 1546 of 5322 1.000
Nucleus DNA Mass Displacement 0.287 297 of 5322 0.999
Nucleus DNA Mean Frac 3 -1.568e-01 4840 of 5322 1.000
Nucleus gH2AX Mean 0.057 2144 of 5322 1.000
Nucleus gH2AX Mean Frac 0 0.262 168 of 5322 1.000
Nucleus Tubulin Mean Frac 0 0.116 1731 of 5322 0.999
Nucleus Tubulin Mean Edge -2.785e-02 3554 of 5322 0.999
Nucleus Tubulin Std Edge -8.395e-02 3711 of 5322 0.999
Nucleus Shape Area -4.822e-02 4447 of 5322 0.990
Nucleus Shape Eccentricity -9.618e-03 2265 of 5322 1.000
Nucleus Shape Form Factor 0.044 856 of 5322 0.998
Cell Tubulin Mean -6.820e-02 4292 of 5322 0.997
Cell Tubulin Mean Frac 3 -2.711e-02 2003 of 5322 0.999
Cell Actin Mean -3.438e-01 5254 of 5322 0.593
Cell Shape Area -2.929e-02 4243 of 5322 0.998
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